Sumber: Lihat artikel asli di Wikipedia
| No. total | No. musim | Judul | Sutradara | Penulis skenario | Tanggal tayang asli | Penonton AS (juta) |
|---|---|---|---|---|---|---|
| 46 | 1 | "The Innocents" | Thomas J. Wright | Michael Duggan | 2 Oktober 1998 (1998-10-02) | 5.17[1][nb 1] |
| 47 | 2 | "Exegesis" | Ralph Hemecker | Chip Johannessen | 9 Oktober 1998 (1998-10-09) | 4.47[2] |
| 48 | 3 | "TEOTWAWKI" | Thomas J. Wright | Chris Carter & Frank Spotnitz | 16 Oktober 1998 (1998-10-16) | 4.77[3] |
| 49 | 4 | "Closure" | Daniel Sackheim | Larry Andries | 23 Oktober 1998 (1998-10-23) | 5.07[3] |
| 50 | 5 | "...Thirteen Years Later" | Thomas J. Wright | Michael R. Perry | 30 Oktober 1998 (1998-10-30) | 5.37[4] |
| 51 | 6 | "Skull and Bones" | Paul Shapiro | Chip Johannessen & Ken Horton | 6 November 1998 (1998-11-06) | 5.07[5] |
| 52 | 7 | "Through a Glass Darkly" | Thomas J. Wright | Patrick Harbinson | 13 November 1998 (1998-11-13) | 5.07[4] |
| 53 | 8 | "Human Essence" | Thomas J. Wright | Michael Duggan | 11 Desember 1998 (1998-12-11) | 4.37[4] |
| 54 | 9 | "Omertà" | Paul Shapiro | Michael R. Perry | 18 Desember 1998 (1998-12-18) | 4.77[6] |
| 55 | 10 | "Borrowed Time" | Dwight Little | Chip Johannessen | 15 Januari 1999 (1999-01-15) | 5.27[6] |
| 56 | 11 | "Collateral Damage" | Thomas J. Wright | Michael R. Perry | 22 Januari 1999 (1999-01-22) | 5.77[6] |
| 57 | 12 | "The Sound of Snow" | Paul Shapiro | Patrick Harbinson | 5 Februari 1999 (1999-02-05) | 4.67[6] |
| 58 | 13 | "Antipas" | Thomas J. Wright | Chris Carter & Frank Spotnitz | 12 Februari 1999 (1999-02-12) | 4.57[7] |
| 59 | 14 | "Matryoshka" | Arthur Forney | Erin Maher & Kay Reindl | 19 Februari 1999 (1999-02-19) | 4.57[7] |
| 60 | 15 | "Forcing the End" | Thomas J. Wright | Marjorie David | 19 Maret 1999 (1999-03-19) | 4.08[7] |
| 61 | 16 | "Saturn Dreaming of Mercury" | Paul Shapiro | Chip Johannessen & Jordan Hawley | 9 April 1999 (1999-04-09) | 4.17[7] |
| 62 | 17 | "Darwin's Eye" | Ken Fink | Patrick Harbinson | 16 April 1999 (1999-04-16) | 3.68[8] |
| 63 | 18 | "Bardo Thodol" | Thomas J. Wright | Chip Johannessen & Virginia Stock | 23 April 1999 (1999-04-23) | 3.78[8] |
| 64 | 19 | "Seven and One" | Peter Markle | Chris Carter & Frank Spotnitz | 30 April 1999 (1999-04-30) | 3.68[8] |
| 65 | 20 | "Nostalgia" | Thomas J. Wright | Michael R. Perry | 7 Mei 1999 (1999-05-07) | 4.47[8] |
| 66 | 21 | "Via Dolorosa" | Paul Shapiro | Marjorie David & Patrick Harbinson | 14 Mei 1999 (1999-05-14) | 4.97[9] |
| 67 | 22 | "Goodbye to All That" | Thomas J. Wright | Ken Horton & Chip Johannessen | 21 Mei 1999 (1999-05-21) | 4.47[9] |